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fixed obtaining queue environment variable
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ljwharbers committed Jan 7, 2025
1 parent b26fc66 commit b20292d
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions conf/vsc_kul_uhasselt.config
Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
// Default to /tmp directory if $VSC_SCRATCH scratch env is not available,
// see: https://github.com/nf-core/configs?tab=readme-ov-file#adding-a-new-config
scratch_dir = System.getenv("VSC_SCRATCH") ?: "/tmp"
tier1_project = System.getenv("SLURM_ACCOUNT") ?: null
avail_queues = System.getenv("VSC_DEDICATED_QUEUES") ?: null
def availQueues = avail_queues?.toString()?.split(',')
scratch_dir = System.getenv("VSC_SCRATCH") ?: "/tmp"
tier1_project = System.getenv("SLURM_ACCOUNT") ?: null
def avail_queues = System.getenv("VSC_DEDICATED_QUEUES") ?: ""
def availQueues = avail_queues.toString().split(',')

// Perform work directory cleanup when the run has succesfully completed
// cleanup = true
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