psmn.config: change clusterOption --parition to queue

nf-core · Nov 6, 2024 · df37bd9 · df37bd9
1 parent bdfc3e0
commit df37bd9
Showing 1 changed file with 11 additions and 11 deletions.
diff --git a/conf/psmn.config b/conf/psmn.config
@@ -19,46 +19,46 @@ process {
         time: 96.h
     ]
     executor = 'slurm'
-    clusterOptions = "--partition=E5,Lake"
+    queue = "E5,Lake"
 
     cpus     = 1
     memory   = 32.GB
     time     = 24.h
 
     withLabel: 'process_single|process_single_thread|sc_tiny|sc_small|sc_medium' {
-        clusterOptions = "--partition=Lake"
+        queue = "Lake"
         cpus   = 1
         memory = 96.GB
         time   = 24.h
     }
-    withLabel:'process_low|mc_small|process_very_low' {
-        clusterOptions = "--partition=Lake"
+    withLabel: 'process_low|mc_small|process_very_low' {
+        queue = "Lake"
         cpus   = 16
         memory = 80.GB
         time   = 24.h
     }
-    withLabel:'process_medium|mc_medium' {
-        clusterOptions = "--partition=Lake"
+    withLabel: 'process_medium|mc_medium' {
+        queue = "Lake"
         cpus   = 32
         memory = 180.GB
         time   = 48.h
     }
-    withLabel:'process_high|mc_large|mc_huge|process_high_cpus|cpus_max' {
-        clusterOptions = "--partition=Lake"
+    withLabel: 'process_high|mc_large|mc_huge|process_high_cpus|cpus_max' {
+        queue = "Lake"
         cpus   = 32
         memory = 370.GB
         time   = 48.h
     }
     withLabel: 'process_long|process_maximum_time|process_long_parallelized' {
-        clusterOptions = "--partition=Lake"
+        queue = "Lake"
         time   = 96.h
     }
     withLabel: 'process_high_memory|memory_max' {
-        clusterOptions = "--partition=Epyc"
+        queue = "Epyc"
         memory = 500.GB
     }
     withLabel: gpu {
-        clusterOptions = "--partition=E5-GPU"
+        queue = "E5-GPU"
     }
 }