Issues

• Can we further tune the outlier filtering to retain true type strain records?

  nhoffman/ya16sdb#89 · Filter by author marykstewart opened on Jul 19, 2026
  1

  

• Plots not populating

  nhoffman/ya16sdb#82 · Filter by author marykstewart opened on Aug 13, 2025
  5

  

• Filter outlier type strain records from database

  nhoffman/ya16sdb#80 · Filter by author marykstewart opened on Jun 5, 2025
  1

• Apply for an Amazon Open Data Sponsorship s3 bucket

  Manuscript
  nhoffman/ya16sdb#75 · Filter by author crosenth opened on Jun 28, 2024

• Manuscript outline

  DocumentationManuscript
  nhoffman/ya16sdb#73 · Filter by author nhoffman opened on Jun 24, 2024
  1

• Add --{negative}-taxid support to Blast database(s)

  nhoffman/ya16sdb#69 · Filter by author dhoogest opened on Jun 4, 2024
  2

  

• Slurm compatibility

  nhoffman/ya16sdb#64 · Filter by author crosenth opened on Jan 26, 2024
  

• requirements.txt should pin all dependencies

  nhoffman/ya16sdb#56 · Filter by author nhoffman opened on Jun 15, 2023
  

• Type strain record present in latest NCBI_16S build not visible on https://ya16sdb.labmed.uw.edu/

  nhoffman/ya16sdb#54 · Filter by author marykstewart opened on May 8, 2023
  5

• Publication status of NCBI records is not current

  nhoffman/ya16sdb#38 · Filter by author marykstewart opened on Jun 30, 2020
  

• Add select and deselect all markers (glyphs) option to dash app

  enhancement
  nhoffman/ya16sdb#18 · Filter by author crosenth opened on Oct 30, 2018

• add sphinx docs

  Documentation
  nhoffman/ya16sdb#1 · Filter by author nhoffman opened on Sep 26, 2017
  2