Display biolucida images in gallery based on scicrunch

[ddjnw1yu]

For sprint ticket - Bug Submission: Image viewer not opening

This should help to hide the biolucida image whose id does not exist in Scicrunch.

[cypress]

Passing run #148 ↗︎

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Details:

Use Scicrunch data to create thumbnail gallery items
Project: SPARC Vue3 Portal Testing	Commit: 5529917740
Status: Passed	Duration: 17:38 💡
Started: Jul 9, 2024 11:20 AM	Ended: Jul 9, 2024 11:38 AM

Review all test suite changes for PR #152 ↗︎

[egauzens]

I don't think this is right since there does appear to be images for those gallery items, for example:

https://sparc.science/datasets/file/287/1?path=files/derivative/MicroCT-and-Segmentation/sub-pig-2/Nerve-2-Segmentation-Files/22_2.jpx

[egauzens]

I don't think this is right since there does appear to be images for those gallery items, for example:

https://sparc.science/datasets/file/287/1?path=files/derivative/MicroCT-and-Segmentation/sub-pig-2/Nerve-2-Segmentation-Files/22_2.jpx

Ah nvm I just read the comments you posted on the Wrike ticket. So ideally once scicrunch has been updated then the images would show again in the gallery, correct?

Saw updated wrike comments

[ddjnw1yu]

I don't think this is right since there does appear to be images for those gallery items, for example:
https://sparc.science/datasets/file/287/1?path=files/derivative/MicroCT-and-Segmentation/sub-pig-2/Nerve-2-Segmentation-Files/22_2.jpx

Ah nvm I just read the comments you posted on the Wrike ticket. So ideally once scicrunch has been updated then the images would show again in the gallery, correct?

Yes, that's right. As long as related Biolucida metadata is updated in Scicrunch, images will show again. The function still uses the Biolucida data to generate gallery image items. Just added one more filtering step to check if these images exist on Scicrunch.

[alan-wu]

@ddjnw1yu A more complete solution is to use the Scicrunch response itself to build up all the biolucida image items on the gallery instead of making an extra call with biolucida.searchDataset. It will be similar to theway scaffold, flatmap and plot item are populate but only include biolucida2d/biolucida3d items with a biolucida id.

[alan-wu]

@egauzens FYI, some datasets have a lot of biolucida images and not all of them are meant to present on the gallery so the presence of a biolucida id gives us an idea of whether a biolucida images should be present/highlighted on the gallery.

[ddjnw1yu]

@ddjnw1yu A more complete solution is to use the Scicrunch response itself to build up all the biolucida image items on the gallery instead of making an extra call with biolucida.searchDataset. It will be similar to theway scaffold, flatmap and plot item are populate but only include biolucida2d/biolucida3d items with a biolucida id.

I have taken a look at the code and had a try. We probably no need to do this. From what I saw, we will still need to call biolucida.searchDataset because some required information does not exist on Scicrunch. Sometimes, Scicrunch may have hundreds of biolucida objects (less on biolucida server).

[ddjnw1yu]

The latest commit uses Scicrunch data to create gallery items.

[egauzens]

I'm fine with either way we find the gallery images, it does look cleaner just getting from scicrunch and so long as it seems about the same computationally then I'm ok with this