Run MP-PCA on ds054 too.

nipreps · Jan 2, 2025 · b883024 · b883024
1 parent ee2dc94
commit b883024
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diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -648,6 +648,7 @@ jobs:
                 ${FASTRACK_ARG} \
                 --fs-no-reconall --sloppy \
                 --output-spaces MNI152NLin2009cAsym:res-2 anat func \
+                --thermal-denoise-method mppca \
                 --mem-mb 14336 --nthreads 4 -vv --debug compcor
       - run: *check_outputs
       - run:

diff --git a/.circleci/ds054_fasttrack_outputs.txt b/.circleci/ds054_fasttrack_outputs.txt
@@ -33,6 +33,8 @@ sub-100185/func/sub-100185_task-machinegame_run-01_desc-hmc_boldref.json
 sub-100185/func/sub-100185_task-machinegame_run-01_desc-hmc_boldref.nii.gz
 sub-100185/func/sub-100185_task-machinegame_run-01_desc-preproc_bold.json
 sub-100185/func/sub-100185_task-machinegame_run-01_desc-preproc_bold.nii.gz
+sub-100185/func/sub-100185_task-machinegame_run-01_desc-noise_boldmap.json
+sub-100185/func/sub-100185_task-machinegame_run-01_desc-noise_boldmap.nii.gz
 sub-100185/func/sub-100185_task-machinegame_run-01_from-boldref_to-auto00000_mode-image_xfm.json
 sub-100185/func/sub-100185_task-machinegame_run-01_from-boldref_to-auto00000_mode-image_xfm.txt
 sub-100185/func/sub-100185_task-machinegame_run-01_from-boldref_to-T1w_mode-image_desc-coreg_xfm.json
@@ -61,6 +63,8 @@ sub-100185/func/sub-100185_task-machinegame_run-02_desc-hmc_boldref.json
 sub-100185/func/sub-100185_task-machinegame_run-02_desc-hmc_boldref.nii.gz
 sub-100185/func/sub-100185_task-machinegame_run-02_desc-preproc_bold.json
 sub-100185/func/sub-100185_task-machinegame_run-02_desc-preproc_bold.nii.gz
+sub-100185/func/sub-100185_task-machinegame_run-02_desc-noise_boldmap.json
+sub-100185/func/sub-100185_task-machinegame_run-02_desc-noise_boldmap.nii.gz
 sub-100185/func/sub-100185_task-machinegame_run-02_from-boldref_to-auto00000_mode-image_xfm.json
 sub-100185/func/sub-100185_task-machinegame_run-02_from-boldref_to-auto00000_mode-image_xfm.txt
 sub-100185/func/sub-100185_task-machinegame_run-02_from-boldref_to-T1w_mode-image_desc-coreg_xfm.json

diff --git a/.circleci/ds054_outputs.txt b/.circleci/ds054_outputs.txt
@@ -43,6 +43,8 @@ sub-100185/func/sub-100185_task-machinegame_run-01_desc-hmc_boldref.json
 sub-100185/func/sub-100185_task-machinegame_run-01_desc-hmc_boldref.nii.gz
 sub-100185/func/sub-100185_task-machinegame_run-01_desc-preproc_bold.json
 sub-100185/func/sub-100185_task-machinegame_run-01_desc-preproc_bold.nii.gz
+sub-100185/func/sub-100185_task-machinegame_run-01_desc-noise_boldmap.json
+sub-100185/func/sub-100185_task-machinegame_run-01_desc-noise_boldmap.nii.gz
 sub-100185/func/sub-100185_task-machinegame_run-01_from-boldref_to-auto00000_mode-image_xfm.json
 sub-100185/func/sub-100185_task-machinegame_run-01_from-boldref_to-auto00000_mode-image_xfm.txt
 sub-100185/func/sub-100185_task-machinegame_run-01_from-boldref_to-T1w_mode-image_desc-coreg_xfm.json
@@ -71,6 +73,8 @@ sub-100185/func/sub-100185_task-machinegame_run-02_desc-hmc_boldref.json
 sub-100185/func/sub-100185_task-machinegame_run-02_desc-hmc_boldref.nii.gz
 sub-100185/func/sub-100185_task-machinegame_run-02_desc-preproc_bold.json
 sub-100185/func/sub-100185_task-machinegame_run-02_desc-preproc_bold.nii.gz
+sub-100185/func/sub-100185_task-machinegame_run-02_desc-noise_boldmap.json
+sub-100185/func/sub-100185_task-machinegame_run-02_desc-noise_boldmap.nii.gz
 sub-100185/func/sub-100185_task-machinegame_run-02_from-boldref_to-auto00000_mode-image_xfm.json
 sub-100185/func/sub-100185_task-machinegame_run-02_from-boldref_to-auto00000_mode-image_xfm.txt
 sub-100185/func/sub-100185_task-machinegame_run-02_from-boldref_to-T1w_mode-image_desc-coreg_xfm.json

diff --git a/.circleci/ds210_fasttrack_outputs.txt b/.circleci/ds210_fasttrack_outputs.txt
@@ -37,6 +37,12 @@ sub-02/func/sub-02_task-cuedSGT_run-01_echo-2_desc-preproc_bold.json
 sub-02/func/sub-02_task-cuedSGT_run-01_echo-2_desc-preproc_bold.nii.gz
 sub-02/func/sub-02_task-cuedSGT_run-01_echo-3_desc-preproc_bold.json
 sub-02/func/sub-02_task-cuedSGT_run-01_echo-3_desc-preproc_bold.nii.gz
+sub-02/func/sub-02_task-cuedSGT_run-01_echo-1_desc-noise_boldmap.json
+sub-02/func/sub-02_task-cuedSGT_run-01_echo-1_desc-noise_boldmap.nii.gz
+sub-02/func/sub-02_task-cuedSGT_run-01_echo-2_desc-noise_boldmap.json
+sub-02/func/sub-02_task-cuedSGT_run-01_echo-2_desc-noise_boldmap.nii.gz
+sub-02/func/sub-02_task-cuedSGT_run-01_echo-3_desc-noise_boldmap.json
+sub-02/func/sub-02_task-cuedSGT_run-01_echo-3_desc-noise_boldmap.nii.gz
 sub-02/func/sub-02_task-cuedSGT_run-01_from-boldref_to-auto00000_mode-image_xfm.json
 sub-02/func/sub-02_task-cuedSGT_run-01_from-boldref_to-auto00000_mode-image_xfm.txt
 sub-02/func/sub-02_task-cuedSGT_run-01_from-boldref_to-T1w_mode-image_desc-coreg_xfm.json