DeepARC:An Attention based Hybrid Model for Predicting Transcription Factor Binding Site from Positional Embedded DNA Sequence

Introduction

1.data:the demo dataset
2.heat:visualizing the attention weight for sequence
3.load_data.py:preprocessing the data
4.models.py:deeparc model
5.myDataSet.py:including data preprocess and embedding
6.util.py: utils from sun
7.main.py:train and test the model

webserver:

DeepARC can be visited at http://www.deeparc.denglab.org/

model and embedding