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of course black, please join the party
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cdiener committed Sep 4, 2024
1 parent 336eb5c commit 962ff03
Showing 1 changed file with 3 additions and 8 deletions.
11 changes: 3 additions & 8 deletions src/cobra/medium/annotations.py
Original file line number Diff line number Diff line change
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"intracellular region",
"intracellular space",
"c0", # GAPSEQ
"C_c" # CARVEME
"C_c", # CARVEME
],
"er": ["endoplasmic reticulum"],
"erm": ["endoplasmic reticulum membrane"],
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"external",
"external medium",
"e0", # GAPSEQ
"C_e" # CARVEME
"C_e", # CARVEME
],
"f": ["flagellum", "bacterial-type flagellum"],
"g": ["golgi", "golgi apparatus"],
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"mm": ["mitochondrial membrane"],
"m": ["mitochondrion", "mitochondria"],
"n": ["nucleus"],
"p": [
"periplasm",
"periplasmic space",
"p0", # GAPSEQ
"C_p" # CARVEME
],
"p": ["periplasm", "periplasmic space", "p0", "C_p"], # GAPSEQ # CARVEME
"x": ["peroxisome", "glyoxysome"],
"u": ["thylakoid"],
"vm": ["vacuolar membrane"],
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