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    40 repositories

    • Normalization

      Public
      RNA-Seq normalization and quantification pipeline
      Roff
      •
      GNU General Public License v3.0
      •5•10•6•0•Updated Nov 25, 2024Nov 25, 2024

    • BEERS2

      Public
      Python
      •
      GNU General Public License v3.0
      •0•6•0•3•Updated Aug 20, 2024Aug 20, 2024

    • ITMAT_office_houRs

      Public
      0•1•0•0•Updated Jun 4, 2024Jun 4, 2024

    • CAMPAREE

      Public
      Configurable And Modular Program Allowing RNA Expression Emulation
      Python
      •
      GNU General Public License v3.0
      •2•5•2•0•Updated Mar 12, 2024Mar 12, 2024

    • BEERS_UTILS

      Public
      Utilities for the BEERS 2 suite of tools.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Nov 30, 2023Nov 30, 2023

    • OmicsBenchmarkReport

      Public
      Report template for omics methods benchmarking
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Oct 5, 2023Oct 5, 2023

    • Barrel

      Public
      Python
      •0•0•0•0•Updated Aug 29, 2023Aug 29, 2023

    • nitecap

      Public
      Nitecap is an exploratory circadian data analysis tool aimed at high-throughput omics data. It provides a web-interface to examine your dataset with highly-responsive visualizations, allowing the easy viewing of hundreds or thousands of genes or other features. Nitecap computes some standard rhythmicity tests for you, including JTK, ARSER, Lomb…
      HTML
      •
      GNU General Public License v3.0
      •1•2•0•4•Updated Feb 16, 2023Feb 16, 2023

    • rum

      Public
      RNA-Seq Unified Mapper
      Roff
      •
      MIT License
      •4•26•49•1•Updated Sep 9, 2022Sep 9, 2022

    • VODKA

      Public
      Perl
      •2•3•0•0•Updated Aug 23, 2020Aug 23, 2020

    • chronobiome

      Public
      Adding additional datasets to Amy's chronobiome analyses
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Jan 29, 2019Jan 29, 2019

    • DRINC

      Public
      Duplication Rate Identifier for NGS Cleanup
      Python
      •0•0•0•0•Updated Dec 3, 2018Dec 3, 2018

    • DECAF

      Public
      Perl
      •0•0•0•0•Updated Apr 19, 2017Apr 19, 2017

    • beers_simulator

      Public
      Perl
      •2•5•1•0•Updated Dec 29, 2015Dec 29, 2015

    • bp1

      Public
      PHP
      •0•0•0•0•Updated Dec 17, 2015Dec 17, 2015

    • AnovaSplice

      Public
      0•0•0•0•Updated Aug 14, 2015Aug 14, 2015

    • bp2

      Public
      PHP
      •0•0•0•0•Updated Jun 12, 2015Jun 12, 2015

    • isatab-templates

      Public
      ISATAB XML templates for use in ISACreator
      0•0•0•0•Updated Sep 18, 2014Sep 18, 2014

    • pade

      Public
      Patterns from Gene Expression
      Python
      •
      Other
      •3•2•2•0•Updated Aug 29, 2014Aug 29, 2014

    • collos

      Public
      CollOS : Collection Of Samples - a lightweight biobanking tool
      Ruby
      •1•0•0•0•Updated Mar 31, 2014Mar 31, 2014

    • pre-pade

      Public
      Pre-PADE
      C
      •0•0•2•0•Updated Nov 7, 2013Nov 7, 2013

    • itmat_archive

      Public
      Simple Rails application to archive the metadata of old experiments (which are on a bunch of disks)
      Ruby
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Aug 3, 2013Aug 3, 2013

    • isareport

      Public
      ISA-Report: Makes nice looking HTML reports from ISA-TAB annotated experiments
      Python
      •0•0•0•0•Updated Apr 8, 2013Apr 8, 2013

    • hogenesch-lab-website

      Public
      Hogenesch Lab Website
      PHP
      •1•2•0•0•Updated Apr 1, 2013Apr 1, 2013

    • biopy-isatab

      Public
      Python parser for ISAtab, a biological file format for experimental metadata
      Python
      •3•0•0•0•Updated Aug 7, 2012Aug 7, 2012

    • aspirin_analysis

      Public
      Aspirin Data Analysis on RoR
      Ruby
      •3•1•0•0•Updated Aug 1, 2012Aug 1, 2012

    • bio-cookbooks

      Public
      A Chef cookbooks repository for bioinformatics tools
      Ruby
      •0•8•0•0•Updated Jan 20, 2012Jan 20, 2012

    • pgfi-hts

      Public
      PGFI High Throughput Sequence Center Repo
      0•2•0•0•Updated Jun 27, 2011Jun 27, 2011

    • chef-cookbooks

      Public
      Chef cookbooks for various services not directly related to bioinformatics, but are related to it
      Ruby
      •0•2•0•0•Updated May 5, 2011May 5, 2011

    • qips-extras

      Public
      collection of scripts or executables that fit into the qips framework
      Ruby
      •1•1•0•0•Updated May 3, 2011May 3, 2011