Extract barcodes (sample and UMI) from read names

[nh13]

In some cases, we get FASTQs that have sample barcodes and UMIs in the read name and I we'd like to extract those. Is that possible?

See:
[1] https://help.basespace.illumina.com/files-used-by-basespace/fastq-files
[2] https://knowledge.illumina.com/software/general/software-general-reference_material-list/000002211

[Yenaled]

This feature is not available yet. I'm working on some major upgrades to splitcode this month, and I'll be sure to add this in in the next week or two.

[Yenaled]

@nh13 Sorry, am very late haha, but I finally got around to adding the feature (along with many other features) to the newest version of splitcode:

https://splitcode.readthedocs.io/en/latest/extracting_from_names.html

Test it a bit and it seems to work.

Still updating the documentation a bit.