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11 Open 16 Closed
11 Open 16 Closed
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Issues list

Bug: @remove directive not parsed correctly in config file
#33 opened Jan 13, 2025 by bentyeh
Test not running to completion on aarch64-linux bug Something isn't working
#31 opened Jan 8, 2025 by zimward
@Yenaled
4
Have --keep be able to output into BAM files rather than FASTQ files enhancement New feature or request
#29 opened Dec 10, 2024 by Yenaled
@Yenaled
Extract barcodes (sample and UMI) from read names enhancement New feature or request
#22 opened Aug 1, 2024 by nh13
@Yenaled
2
Allow stitching together extraction sequences of different names and allow extraction of final barcode sequence enhancement New feature or request
#21 opened Jul 9, 2024 by Yenaled
allow subs to make a substitution to an empty string (i.e. delete the entire sequence) enhancement New feature or request
#20 opened Jul 8, 2024 by Yenaled
Feature Request: Keeping the FASTQ quality scores enhancement New feature or request
#18 opened Jul 8, 2024 by JohnMMa
1
feature request: support unmapped BAMs as input enhancement New feature or request
#17 opened Jul 3, 2024 by znorgaard
1
Long-read usage
#16 opened Jun 28, 2024 by mcortes-lopez
1
Counting all tag combinations and reads without tags enhancement New feature or request
#14 opened May 3, 2024 by andreafratton
1
Feature request: Processing on multiple sets of FASTQ files
#13 opened Mar 22, 2024 by JohnMMa
1
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