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@pathogen-genomics

UCSC Pathogen Genomics

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  1. usher-public-workflow usher-public-workflow Public

    A Dockstore WDL Workflow that uses UShER to place your consensus.fasta sequences on the SARS-CoV-2 phylogeny

    WDL 2 1

  2. introduction-website introduction-website Public

    Forked from jmcbroome/introduction-website

    Code for a webpage displaying introductions and resulting clusters of coronavirus across the USA. Customized for CA Dept. of Public Health.

    JavaScript 1 2

  3. taxonium taxonium Public

    Forked from theosanderson/taxonium

    Explore very large trees in the browser

    JavaScript

  4. integrate-covidnet integrate-covidnet Public

    This repository contains a single WDL Workflow for syncing with Dockstore and then running on the Terra Cloud Computing Platform

    WDL

  5. cdph-rsv cdph-rsv Public

    Scripts and files for processing RSV fastq files

    Shell

Repositories

Showing 5 of 5 repositories
  • cdph-rsv Public

    Scripts and files for processing RSV fastq files

    pathogen-genomics/cdph-rsv’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 17, 2024
  • introduction-website Public Forked from jmcbroome/introduction-website

    Code for a webpage displaying introductions and resulting clusters of coronavirus across the USA. Customized for CA Dept. of Public Health.

    pathogen-genomics/introduction-website’s past year of commit activity
    JavaScript 1 5 1 0 Updated Apr 18, 2024
  • taxonium Public Forked from theosanderson/taxonium

    Explore very large trees in the browser

    pathogen-genomics/taxonium’s past year of commit activity
    JavaScript 0 GPL-3.0 20 0 0 Updated Jan 10, 2024
  • integrate-covidnet Public

    This repository contains a single WDL Workflow for syncing with Dockstore and then running on the Terra Cloud Computing Platform

    pathogen-genomics/integrate-covidnet’s past year of commit activity
    WDL 0 0 0 0 Updated Dec 7, 2022
  • usher-public-workflow Public

    A Dockstore WDL Workflow that uses UShER to place your consensus.fasta sequences on the SARS-CoV-2 phylogeny

    pathogen-genomics/usher-public-workflow’s past year of commit activity
    WDL 2 1 0 0 Updated Oct 18, 2021

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