ignore unsolvable warnings

pinellolab · Nov 25, 2023 · e8632f7 · e8632f7
1 parent 085501a
commit e8632f7
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Showing 2 changed files with 13 additions and 1 deletion.
diff --git a/bean/preprocessing/data_class.py b/bean/preprocessing/data_class.py
@@ -440,7 +440,7 @@ def __getitem__(self, guide_idx):
     def get_target_lengths(self, screen, target_col="target"):
         target_len_list = []
         screen.guides[target_col] = screen.guides[target_col].astype("category")
-        cur_item = screen.guides[target_col].cat.codes[0]
+        cur_item = screen.guides[target_col].cat.codes.iloc[0]
         cur_len = 0
         n_targets = 0
         for i in screen.guides[target_col].cat.codes:

diff --git a/bin/bean-run b/bin/bean-run
@@ -2,6 +2,7 @@
 import os
 import sys
 import logging
+import warnings
 from copy import deepcopy
 from functools import partial
 import numpy as np
@@ -58,6 +59,17 @@ DATACLASS_DICT = {
     "MultiMixtureNormal+Acc": TilingSortingReporterScreenData,
 }
 
+warnings.filterwarnings(
+    "ignore",
+    category=FutureWarning,
+    message=r".*is_categorical_dtype is deprecated and will be removed in a future version.*",
+)
+warnings.filterwarnings(
+    "ignore",
+    category=FutureWarning,
+    message=r".*FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas.*",
+)
+
 
 def identify_model_guide(args):
     if args.mode == "tiling":