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Submodule sshash
updated
27 files
+21 −0 | CMakeLists.txt | |
+50 −10 | README.md | |
+1 −1 | external/pthash | |
+1 −1 | include/bit_vector_iterator.hpp | |
+2 −2 | include/buckets.hpp | |
+2 −2 | include/builder/build.cpp | |
+1 −1 | include/builder/build_index.hpp | |
+19 −6 | include/builder/build_skew_index.hpp | |
+1 −1 | include/builder/parse_file.hpp | |
+1 −20 | include/builder/util.hpp | |
+0 −2 | include/constants.hpp | |
+1 −1 | include/cover/cover.hpp | |
+5 −1 | include/cover/node.hpp | |
+6 −6 | include/cover/parse_file.hpp | |
+45 −29 | include/dictionary.cpp | |
+15 −9 | include/dictionary.hpp | |
+3 −3 | include/ef_sequence.hpp | |
+1 −0 | include/gz/zip_stream.hpp | |
+19 −9 | include/hash_util.hpp | |
+4 −1 | include/kmer.hpp | |
+12 −7 | include/minimizers.hpp | |
+77 −29 | include/util.hpp | |
+1 −1 | src/check_utils.hpp | |
+2 −2 | src/common.hpp | |
+2 −2 | src/permute.cpp | |
+1 −1 | src/query.cpp | |
+37 −6 | test/test_alphabet.cpp |