Merge pull request #72 from steeleb/main

Shoulda coulda woulda... But better transferability/scalability?
rossyndicate · Jan 26, 2024 · d0671e7 · d0671e7
2 parents 9875b25 + 464e028
commit d0671e7
Show file tree

Hide file tree

Showing 42 changed files with 10,096 additions and 17,180 deletions.
diff --git a/Methods_Results_Summary.Rmd b/Methods_Results_Summary.Rmd
diff --git a/Methods_Results_Summary.html b/Methods_Results_Summary.html
diff --git a/README.md b/README.md
@@ -5,6 +5,13 @@ Contact: B Steele (B dot Steele at colostate dot edu)
 
 This repository is covered by the MIT use license. We request that all downstream uses of this work be available to the public when possible.
 
+Note, there are two methods of authentication used for the Earth Engine workflows.
+A major authentication changed in December 2023 v0.1.383, where authentication 
+was completed using ee.Authenticate() via python. Prior to that version, authentication
+was completed using `earthengine authenticate` at the command line. If you are
+attempting to reproduce the code here, but have a version >= v0.1.383, you will
+need to use `ee.Authenticate()` instead of the command line `earthengine authenticate`.
+
 ## Folder Descriptions
 
 *availability_checks*: scripts to document image availability for our AOI

diff --git a/data/output/GTB_2023-08-03_l8_confusion.csv b/data/output/GTB_2023-08-03_l8_confusion.csv
diff --git a/data/output/GTB_2023-08-03_l8_training_confusion.csv b/data/output/GTB_2023-08-03_l8_training_confusion.csv
diff --git a/data/output/GTB_2023-08-03_l9_confusion.csv b/data/output/GTB_2023-08-03_l9_confusion.csv
diff --git a/data/output/GTB_2023-08-03_l9_training_confusion.csv b/data/output/GTB_2023-08-03_l9_training_confusion.csv
diff --git a/data/output/GTB_2023-08-03_performance_stats.csv b/data/output/GTB_2023-08-03_performance_stats.csv
diff --git a/data/output/GTB_2023-08-03_sen_confusion.csv b/data/output/GTB_2023-08-03_sen_confusion.csv
diff --git a/data/output/GTB_2023-08-03_sen_training_confusion.csv b/data/output/GTB_2023-08-03_sen_training_confusion.csv
diff --git a/data/output/GTB_2023-08-03_L5_confusion.csv → data/output/GTB_2024-01-08_l5_confusion.csv b/data/output/GTB_2023-08-03_L5_confusion.csv → data/output/GTB_2024-01-08_l5_confusion.csv
diff --git a/.../GTB_2023-08-03_L5_training_confusion.csv → .../GTB_2024-01-08_l5_training_confusion.csv b/.../GTB_2023-08-03_L5_training_confusion.csv → .../GTB_2024-01-08_l5_training_confusion.csv
diff --git a/data/output/GTB_2023-08-03_l7_confusion.csv → data/output/GTB_2024-01-08_l7_confusion.csv b/data/output/GTB_2023-08-03_l7_confusion.csv → data/output/GTB_2024-01-08_l7_confusion.csv
diff --git a/.../GTB_2023-08-03_l7_training_confusion.csv → .../GTB_2024-01-08_l7_training_confusion.csv b/.../GTB_2023-08-03_l7_training_confusion.csv → .../GTB_2024-01-08_l7_training_confusion.csv
diff --git a/data/output/GTB_LS5_2024-01-08_performance_stats.csv b/data/output/GTB_LS5_2024-01-08_performance_stats.csv
@@ -0,0 +1,2 @@
+satellite,cloud,openWater,lightNearShoreSediment,offShoreSediment,darkNearShoreSediment,GTB_accuracy,GTB_kappa
+Landsat 5,0.9820788530465949,0.9358490566037736,0.7651006711409396,0.7710843373493976,0.676056338028169,0.8731182795698925,0.8342476346983411
diff --git a/data/output/GTB_LS7_2024-01-08_performance_stats.csv b/data/output/GTB_LS7_2024-01-08_performance_stats.csv
@@ -0,0 +1,2 @@
+satellite,cloud,openWater,lightNearShoreSediment,offShoreSediment,darkNearShoreSediment,GTB_accuracy,GTB_kappa
+Landsat 7,0.9876543209876544,0.9655172413793103,0.894736842105263,0.9345794392523364,0.6153846153846153,0.9325581395348838,0.9120158046990758
diff --git a/data/output/GTB_by_mission_v2023-08-03.csv b/data/output/GTB_by_mission_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_5_stack_nosc_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_5_stack_nosc_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_5_stack_sc_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_5_stack_sc_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_5_stack_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_5_stack_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_7_stack_nosc_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_7_stack_nosc_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_7_stack_sc_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_7_stack_sc_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_7_stack_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_7_stack_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_8_stack_nosc_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_8_stack_nosc_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_8_stack_sc_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_8_stack_sc_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_8_stack_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_8_stack_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_9_stack_nosc_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_9_stack_nosc_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_9_stack_sc_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_9_stack_sc_v2023-08-03.csv
diff --git a/data/output/gradientTreeBoost_landsat_9_stack_v2023-08-03.csv b/data/output/gradientTreeBoost_landsat_9_stack_v2023-08-03.csv
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		satellite,cloud,openWater,lightNearShoreSediment,offShoreSediment,darkNearShoreSediment,GTB_accuracy,GTB_kappa
		Landsat 5,0.9820788530465949,0.9358490566037736,0.7651006711409396,0.7710843373493976,0.676056338028169,0.8731182795698925,0.8342476346983411
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		satellite,cloud,openWater,lightNearShoreSediment,offShoreSediment,darkNearShoreSediment,GTB_accuracy,GTB_kappa
		Landsat 7,0.9876543209876544,0.9655172413793103,0.894736842105263,0.9345794392523364,0.6153846153846153,0.9325581395348838,0.9120158046990758