Now parsing enrichment methods before storing config

src/funki/analysis.py

@@ -1,6 +1,7 @@
 import scanpy as sc
 import anndata as ad
 import decoupler as dc
+from decoupler.decouple import parse_methods
 from pydeseq2.dds import DeseqDataSet, DefaultInference
 from pydeseq2.ds import DeseqStats
 
@@ -60,6 +61,10 @@ def enrich(
         erated/decoupler.decouple.html#decoupler.decouple
     '''
 
+    # Using methods parser from Decoupler before storing config
+    # This prevents e.g. storing `None` when running with default methods
+    methods = parse_methods(methods)[0]
+
     # Storing parameters
     data.uns['funki']['enrich'] = {
         'methods': methods,