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@ChristinaSchmidt1 ChristinaSchmidt1 released this 02 Oct 11:05
· 156 commits to main since this release

MetaProViz: METabolomics pre-PRocessing, functiOnal analysis and VIZualisation
This is the second package release V2.1.0. where we did:

  • Updated Viz helper functions to work with the latest ggplot2 update, which affected the grid parameter adaptation
  • Added Metadata analysis options and a vignette explaining these functionalities
  • Added more prior knowledge options and and ID translation function to work with different ID types. There is also a new vignette for this.
  • Updated the overview figure and description for MetaProViz
  • Added log files

MetaProViz can analyse standard metabolomics and exometabolomics data (CoRe). It performs pre-processing including feature filtering, missing value imputation, normalisation and outlier detection. It perform functional analysis including differential metabolite analysis (DMA), clustering based on regulatory rules (MCA) and contains different visualisation methods to extract biological interpretable graphs and saves them in a publication ready format.