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image: nfcore/gitpod:latest | ||
tasks: | ||
- name: Update Nextflow and setup pre-commit | ||
command: | | ||
pre-commit install --install-hooks | ||
nextflow self-update | ||
- name: unset JAVA_TOOL_OPTIONS | ||
command: | | ||
unset JAVA_TOOL_OPTIONS | ||
|
||
vscode: | ||
extensions: # based on nf-core.nf-core-extensionpack | ||
- codezombiech.gitignore # Language support for .gitignore files | ||
# - cssho.vscode-svgviewer # SVG viewer | ||
- esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code | ||
- eamodio.gitlens # Quickly glimpse into whom, why, and when a line or code block was changed | ||
- EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files | ||
- Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar | ||
- mechatroner.rainbow-csv # Highlight columns in csv files in different colors | ||
# - nextflow.nextflow # Nextflow syntax highlighting | ||
# - nextflow.nextflow # Nextflow syntax highlighting | ||
- oderwat.indent-rainbow # Highlight indentation level | ||
- streetsidesoftware.code-spell-checker # Spelling checker for source code | ||
- charliermarsh.ruff # Code linter Ruff |