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Update pyproject.toml
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ori-kron-wis authored Dec 31, 2024
1 parent bc57678 commit 82d4d39
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,7 @@ dependencies = [
"lightning>=2.0",
"ml-collections>=0.1.1",
"mudata>=0.1.2",
"numba>=0.60.0"
"numpy",
"numpyro>=0.12.1",
"pandas",
Expand Down Expand Up @@ -85,18 +86,18 @@ autotune = ["hyperopt>=0.2", "ray[tune]>=2.5.0"]
# scvi.hub.HubModel.pull_from_s3
aws = ["boto3"]
# scvi.data.cellxgene
census = ["cellxgene-census"]
census = ["cellxgene-census","numpy<2.0"]
# scvi.hub dependencies
hub = ["huggingface_hub", "igraph", "leidenalg","dvc[s3]"]
# scvi.data.add_dna_sequence
regseq = ["biopython>=1.81", "genomepy"]
# scvi.criticism and read 10x
scanpy = ["scanpy>=1.10","scikit-misc"]
# for convinient files sharing
file_share = ["pooch"]
pooch = ["pooch"]

optional = [
"scvi-tools[autotune,aws,hub,file_share,regseq,scanpy]"
"scvi-tools[autotune,aws,hub,pooch,regseq,scanpy]"
]
tutorials = [
"cell2location",
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