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[DON'T MERGE] diff between 0.20.x and 1.1.x #2587

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wants to merge 25 commits into from
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[DON'T MERGE] diff between 0.20.x and 1.1.x #2587

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martinkim0
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meeseeksmachine and others added 25 commits February 2, 2023 10:55
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* ruff src

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* autodoc version

* rel note

* fix scar

* drop autodoc typehints

* default role

* rel note

* default values

* undo

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
(cherry picked from commit f802370)
…s in var names/obsm columns)

* fix fdr when pd index is int

* rel note and test

* Update scvi/model/base/_utils.py

* Update index.md

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Update index.md

---------

Co-authored-by: Martin Kim <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
(cherry picked from commit 098f49f)
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codecov bot commented Mar 1, 2024

Codecov Report

Attention: Patch coverage is 95.21912% with 12 lines in your changes are missing coverage. Please review.

Project coverage is 89.14%. Comparing base (486e3e4) to head (cb17e10).
Report is 305 commits behind head on main.

Files Patch % Lines
scvi/data/_built_in_data/_dataset_10x.py 0.00% 2 Missing ⚠️
scvi/external/scar/_model.py 33.33% 2 Missing ⚠️
scvi/model/_multivi.py 60.00% 2 Missing ⚠️
scvi/model/utils/_mde.py 33.33% 2 Missing ⚠️
scvi/_decorators.py 0.00% 1 Missing ⚠️
scvi/external/cellassign/_model.py 50.00% 1 Missing ⚠️
scvi/model/base/_differential.py 75.00% 1 Missing ⚠️
scvi/module/_vaec.py 75.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #2587      +/-   ##
==========================================
- Coverage   90.40%   89.14%   -1.27%     
==========================================
  Files         142      142              
  Lines       11104    11110       +6     
==========================================
- Hits        10039     9904     -135     
- Misses       1065     1206     +141     
Flag Coverage Δ
unittests 89.14% <95.21%> (?)

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@martinkim0 martinkim0 changed the base branch from main to 1.1.x March 1, 2024 18:07
@martinkim0 martinkim0 changed the title [DON'T MERGE] diff between 0.20.x and main [DON'T MERGE] diff between 0.20.x and 1.1.x Mar 1, 2024
@martinkim0 martinkim0 closed this Mar 1, 2024
@martinkim0 martinkim0 deleted the 0.20.x branch March 2, 2024 00:57
@martinkim0 martinkim0 restored the 0.20.x branch March 2, 2024 00:57
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3 participants