Maxsibilla/origin fetch #37
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Maxsibilla/pull origin
* General: Regenerate docs for atacseq * General: Update codeowners --------- Co-authored-by: Juan Puerto <=>
* Update phenocycler-v2.yaml Update to next-gen schema Fixed requirement for qptiff.intermediate files Removed lab_processed/annotations/ per 1/8/24 DCWG meeting. * Update histology-v2.yaml Add lab_processe/images/*.tissue-boundary.geojson * Update lcms-v2.yaml Update to next-gen directory schema * Update geomx-ngs-v2.yaml * Update CHANGELOG.md --------- Co-authored-by: Gesina Phillips <[email protected]>
* Update phenocycler-v2.yaml Update to next-gen schema * Update CHANGELOG.md Phenocycler next-gen directory schema * Update phenocycler-v2.yaml Fixed requirement for qptiff.intermediate files * Update phenocycler-v2.yaml Removed lab_processed/annotations/ per 1/8/24 DCWG meeting. * Update histology-v2.yaml Add lab_processe/images/*.tissue-boundary.geojson * Update CHANGELOG.md * Update lcms-v2.yaml Update to next-gen directory schema * Update CHANGELOG.md * Update geomx-ngs-v2.yaml Update to next-gen directory schema * Update CHANGELOG.md * fixing spacing error * Update phenocycler-v2.yaml Add new file names * update to lcms example * reverting mistaken changes to spacing * updating lcms docs for testing * updates to phenocycler and histology docs * fixing weird formatting of dir schema in docs index files * updated docs, fix to geomx-ngs pattern * General: Remove example --------- Co-authored-by: j-uranic <[email protected]> Co-authored-by: Juan Puerto <=>
* Update phenocycler-v2.yaml Update to next-gen schema * Update CHANGELOG.md Phenocycler next-gen directory schema * Update phenocycler-v2.yaml Fixed requirement for qptiff.intermediate files * Update phenocycler-v2.yaml Removed lab_processed/annotations/ per 1/8/24 DCWG meeting. * Update histology-v2.yaml Add lab_processe/images/*.tissue-boundary.geojson * Update CHANGELOG.md * Update lcms-v2.yaml Update to next-gen directory schema * Update CHANGELOG.md * Update geomx-ngs-v2.yaml Update to next-gen directory schema * Update CHANGELOG.md * fixing spacing error * Update phenocycler-v2.yaml Add new file names * update to lcms example * reverting mistaken changes to spacing * updating lcms docs for testing * updates to phenocycler and histology docs * fixing weird formatting of dir schema in docs index files * updated docs, fix to geomx-ngs pattern * General: Remove example * General: Update Histology & PhenoCycler * General: Update Histology & PhenoCycler * Docs: Update Histology & PhenoCycler * Docs: Update docs --------- Co-authored-by: j-uranic <[email protected]> Co-authored-by: Gesina Phillips <[email protected]> Co-authored-by: Juan Puerto <=>
…um#1285) * refactored plugin and contributors/antibodies checking logic in upload.py, updated test data accordingly * ran online tests, updated outputs accordingly; all mocked responses updated due to changes to assayclassifier responses * added plugin tests
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