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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 389 43

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 245 36

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 141 25

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 137 48

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 88 26

Repositories

Showing 10 of 180 repositories
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 23 Apache-2.0 313 91 36 Updated Jan 11, 2025
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 45 GPL-3.0 17 22 4 Updated Jan 11, 2025
  • seuron Public Forked from wongwill86/air-tasks

    SEUnglab neuRON pipeline

    seung-lab/seuron’s past year of commit activity
    Python 6 MIT 6 1 0 Updated Jan 11, 2025
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 6 BSD-3-Clause 1 9 0 Updated Jan 11, 2025
  • dijkstra3d Public

    Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes

    seung-lab/dijkstra3d’s past year of commit activity
    C++ 77 GPL-3.0 13 7 1 Updated Jan 10, 2025
  • CAVEpipelines Public

    Instructions for creating chunkedgraph, initial meshing, l2cache etc

    seung-lab/CAVEpipelines’s past year of commit activity
    HCL 3 MPL-2.0 4 0 3 Updated Jan 10, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 137 BSD-3-Clause 48 77 5 Updated Jan 10, 2025
  • compresso Public Forked from VCG/compresso

    Compresso: Efficient Compression of Segmentation Data For Connectomics

    seung-lab/compresso’s past year of commit activity
    C++ 4 4 3 0 Updated Jan 9, 2025
  • ng-extend Public
    seung-lab/ng-extend’s past year of commit activity
    TypeScript 4 7 3 26 Updated Jan 8, 2025
  • microviewer Public

    Multiplatform 3D numpy image browser based viewer with voxel painting.

    seung-lab/microviewer’s past year of commit activity
    JavaScript 12 LGPL-2.1 1 5 0 Updated Jan 3, 2025

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