Tweaks and formating

steffilazerte · Jan 17, 2024 · 724b4f4 · 724b4f4
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diff --git a/.gitignore b/.gitignore
@@ -9,5 +9,6 @@
 .DS_Store
 .quarto
 Data/
+*_files
 */02_range_maps_files/figure-html/*
 *cache/
diff --git a/02_range_maps.qmd b/02_range_maps.qmd
@@ -155,6 +155,8 @@ recvs |>
 
 ## Plots
 
+### Prepare basemaps
+
 Next we'll plot each species range and the overlapping receivers for quality 
 control.
 
@@ -177,7 +179,17 @@ ranges <- bind_rows(
   bind_cols(ranges_buffer, type = "Buffered Range"))
 ```
 
+
+### Create range plots
+
 Now we're ready to plot!
+
+:::{.callout-important}
+## No plots online
+There are temporarily no plots in this version of the page online as we have
+not yet received permission from eBird to share these in a semi-open manner.
+:::
+
 ```{r}
 #| fig.height: 8
 #| fig.width: 10

diff --git a/03_basic_filters.qmd b/03_basic_filters.qmd
@@ -3,6 +3,12 @@ title: Basic Filtering
 eval: false
 ---
 
+:::{.callout-note}
+# Work in progress
+This section needs to be formatted and finished
+:::
+
+
 # Setup ---------------------------------------------------------------
 
 

diff --git a/_quarto.yml b/_quarto.yml
@@ -1,7 +1,7 @@
 project:
   type: website
   output-dir: docs
-  title: "Urban migration stopovers"
+  title: "Motus tracking of urban migration stopovers"
 
 website: 
   sidebar: 
@@ -29,6 +29,7 @@ format:
     date: today
     toc: true
     toc-depth: 3
+    toc-expand: true
     lightbox: auto
     callout-icon: false
     callout-appearance: minimal

diff --git a/docs/00_workflow.html b/docs/00_workflow.html
@@ -9,7 +9,7 @@
 <meta name="author" content="Steffi LaZerte">
 <meta name="dcterms.date" content="2024-01-17">
 
-<title>Urban migration stopovers - Workflow</title>
+<title>Motus tracking of urban migration stopovers - Workflow</title>
 <style>
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
@@ -97,7 +97,7 @@
   <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
     <div class="pt-lg-2 mt-2 text-left sidebar-header">
     <div class="sidebar-title mb-0 py-0">
-      <a href="./">Urban migration stopovers</a> 
+      <a href="./">Motus tracking of urban migration stopovers</a> 
         <div class="sidebar-tools-main">
     <a href="https://github.com/steffilazerte/urban_motus" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-github"></i></a>
 </div>
@@ -174,7 +174,7 @@
 <div id="quarto-sidebar-glass" class="quarto-sidebar-collapse-item" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item"></div>
 <!-- margin-sidebar -->
     <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
-        <nav id="TOC" role="doc-toc" class="toc-active">
+        <nav id="TOC" role="doc-toc" class="toc-active" data-toc-expanded="99">
     <h2 id="toc-title">On this page</h2>
 
   <ul>

diff --git a/docs/01_download.html b/docs/01_download.html
@@ -9,7 +9,7 @@
 <meta name="author" content="Steffi LaZerte">
 <meta name="dcterms.date" content="2024-01-17">
 
-<title>Urban migration stopovers - Download/Update Data</title>
+<title>Motus tracking of urban migration stopovers - Download/Update Data</title>
 <style>
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
@@ -132,7 +132,7 @@
   <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
     <div class="pt-lg-2 mt-2 text-left sidebar-header">
     <div class="sidebar-title mb-0 py-0">
-      <a href="./">Urban migration stopovers</a> 
+      <a href="./">Motus tracking of urban migration stopovers</a> 
         <div class="sidebar-tools-main">
     <a href="https://github.com/steffilazerte/urban_motus" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-github"></i></a>
 </div>
@@ -209,7 +209,7 @@
 <div id="quarto-sidebar-glass" class="quarto-sidebar-collapse-item" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item"></div>
 <!-- margin-sidebar -->
     <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
-        <nav id="TOC" role="doc-toc" class="toc-active">
+        <nav id="TOC" role="doc-toc" class="toc-active" data-toc-expanded="99">
     <h2 id="toc-title">On this page</h2>
 
   <ul>
-Original file line number
+Diff line change
@@ Expand Up / @@ -9,5 +9,6 @@ @@
     .DS_Store
     .quarto
     Data/
+    *_files
     */02_range_maps_files/figure-html/*
     *cache/