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Revamp survival analysis interface (#842)
* cox_ph add all arguments * updated test to use keywords * weibull_aft arguments update * log_logistic update * updated log logistic example * store summary df in adata.uns * try moving np * omit inplace keyword * added explanation, as to where the results are stored * corrected spelling * updated tests to check for .uns ( should be removed later, when the univariates are updated ) * fix argument order, doc fixes * slightly simpler wording * fiexed spelling Co-authored-by: Lukas Heumos <[email protected]> * Update ehrapy/tools/_sa.py Co-authored-by: Lukas Heumos <[email protected]> * Update ehrapy/tools/_sa.py Co-authored-by: Lukas Heumos <[email protected]> * Update ehrapy/tools/_sa.py Co-authored-by: Lukas Heumos <[email protected]> * Update ehrapy/tools/_sa.py Co-authored-by: Lukas Heumos <[email protected]> * Update ehrapy/tools/_sa.py Co-authored-by: Lukas Heumos <[email protected]> * Update ehrapy/tools/_sa.py Co-authored-by: Lukas Heumos <[email protected]> * Update ehrapy/tools/_sa.py Co-authored-by: Lukas Heumos <[email protected]> * renamed function to be clearer * Add uns_key parameter to Kaplan-Meier, Nelson-Aalen, and Weibull functions for customizable storage in AnnData object * Update test assertions in TestSA for event_table handling and pass adata to assertion method * uns to in doc --------- Co-authored-by: Lukas Heumos <[email protected]> Co-authored-by: eroell <[email protected]> Co-authored-by: Eljas Roellin <[email protected]>
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