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A method for variant graph genotyping based on exact alignment of k-mers
The first app for Mobile DNA Sequence Alignment and Analysis
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
A collection of publications on comparison of high-throughput sequencing technologies.
Sentieon DNAseq
Explainable Multimodal Deep Learning for Huntington’s Disease Forecasting Using EfficientNet-B3 and Graph Neural Networks
Fake genomes, fake sequencing, real insights.
Classify DNA sequence into Binary class using different Classification algorithms.
Fast C code for identifying and removing primers and adapters
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
Deployed medical apps on streamlit
Generalizing deep learning-based variant callers via domain adaptation and semi-supervised learning
Scripts for bioinformatics analysis of sequencing data
Data Structures And Algorithms
Tool repositiory for bam files
Tool for generating artificial fastq files which can be used for testing the fidelity of NGS analysis pipelines.
Projects related to Big Data course will be implemented in this repository.
A package primarily designed for analysing next generation sequencing DNA data from families with pedigree information in order to identify rare variants that are potentially causal of a disease/trait.
Smith-Waterman dynamic programming local genomic sequence alignment with gap penalties and score matrix traceback
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