Update scripts to use JEDI skylab v7

[chan-hoo]

Description

• Update the version of JEDI skylab from v4 to v7.
• Update ex-scripts to use skylab v7 and to meet the NCO implementation standards.
• Replace the submodule DA_update with apply_incr directly.
• Add the templates and configuration files in DA_update to parm.
• Create the ush directory.

Anticipated changes to regression tests:

• Is baseline change expected ?

Subcomponents involved:

• DA_update (ufs-community/land-DA)
• ufsLand.fd (NOAA-EPIC/ufs-land-driver-emc-dev)
• ufs_model.fd (ufs-community/ufs-weather-model)
• vector2tile_converter.fd (NOAA-PSL/land-vector2tile)
• none

Linked PR's and Issues:

Fixes Issues #46, #89, #90, and #91

Testing (for CM's):

• RDHPCS
  • Hera
  • Orion
  • Jet
  • Gaea
  • Cheyenne
• CI
  • Completed
• PW-Clouds
  • AWS
  • AZURE
  • GCP

[chan-hoo]

In Ctest, tests 5 and 6 failed when the result files were compared to the test_base files:

• test 5 (tile2vector)

Not equal to tolerance rtol=1e-08, atol=1e-06

Mismatched elements: 471 / 128254 (0.367%)
Max absolute difference: 0.00412437
Max relative difference: 0.04656209

• test 6 (land driver)

AssertionError:
Not equal to tolerance rtol=1e-08, atol=1e-06

Mismatched elements: 443 / 128254 (0.345%)
Max absolute difference: 0.0111796
Max relative difference: 0.09948057

This might be caused by the new version of JEDI (skylab v.7), but I am not sure.

[jkbk2004]

In Ctest, tests 5 and 6 failed when the result files were compared to the test_base files:

• test 5 (tile2vector)

Not equal to tolerance rtol=1e-08, atol=1e-06

Mismatched elements: 471 / 128254 (0.367%)
Max absolute difference: 0.00412437
Max relative difference: 0.04656209

• test 6 (land driver)

AssertionError:
Not equal to tolerance rtol=1e-08, atol=1e-06

Mismatched elements: 443 / 128254 (0.345%)
Max absolute difference: 0.0111796
Max relative difference: 0.09948057

This might be caused by the new version of JEDI (skylab v.7), but I am not sure.

No surprise to see impact on the computed result with jedi bundle update even along with stack update (previously installed before this pr). It will be good to check unit of mean/max diff values. Scatter plots for sanity check.

[chan-hoo]

@jkbk2004, with the new base files:

Orion-login-1[41] chjeon$ ctest --rerun-failed
Test project /work/noaa/epic/chjeon/landda_sub/land-DA_workflow/sorc/build
    Start 5: test_tile2vector
1/2 Test #5: test_tile2vector .................   Passed    2.37 sec
    Start 6: test_land_driver
2/2 Test #6: test_land_driver .................   Passed    7.82 sec

100% tests passed, 0 tests failed out of 2

[chan-hoo]

Orion-login-1[7] chjeon$ ctest
Test project /work/noaa/epic/chjeon/landda_sub/land-DA_workflow/sorc/build
    Start 1: test_vector2tile
1/7 Test #1: test_vector2tile .................   Passed   12.56 sec
    Start 2: test_create_ens
2/7 Test #2: test_create_ens ..................   Passed   19.52 sec
    Start 3: test_letkfoi_snowda
3/7 Test #3: test_letkfoi_snowda ..............   Passed   71.65 sec
    Start 4: test_apply_jediincr
4/7 Test #4: test_apply_jediincr ..............   Passed    4.44 sec
    Start 5: test_tile2vector
5/7 Test #5: test_tile2vector .................   Passed   13.50 sec
    Start 6: test_land_driver
6/7 Test #6: test_land_driver .................   Passed    9.43 sec
    Start 7: test_ufs_datm_land
7/7 Test #7: test_ufs_datm_land ...............   Passed  513.33 sec

100% tests passed, 0 tests failed out of 7

Total Test time (real) = 644.70 sec