make web interface doe dydra

wilkinsonlab · Nov 28, 2024 · 028f821 · 028f821
1 parent ddada1a
commit 028f821
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Showing 67 changed files with 20,833 additions and 442 deletions.
diff --git a/VP/wrapped_services/diadra/app/controllers/routes.rb b/VP/wrapped_services/diadra/app/controllers/routes.rb
@@ -7,7 +7,14 @@ def set_routes()
 
   get "/diadra/lookup" do
 
+    unless params["species"]
+      redirect "/diadra/interface/form"
+      halt
+    end
+
     species = params["species"] ? params["species"].strip : ""
+
+    @species = species
     @resp = species_lookup(species: species) # "./lib/vp"
 
     request.accept.each do |type|
@@ -21,6 +28,10 @@ def set_routes()
     end
   end
 
+  get "/diadra/interface/form" do
+    halt erb :lookupform
+  end
+
   get "/diadra/interface" do
     redirect "https://wilkinsonlab.github.io/FLAIR-GG/VP/interfaces/wrapped_services.yaml"
   end

diff --git a/VP/wrapped_services/diadra/app/views/_dataservices.erb b/VP/wrapped_services/diadra/app/views/_dataservices.erb
diff --git a/VP/wrapped_services/diadra/app/views/_footer.erb b/VP/wrapped_services/diadra/app/views/_footer.erb
@@ -1,6 +1,39 @@
-      <footer class="branding">
-        <small><strong><a href="https://wilkinsonlab.github.io/FLAIR-GG/">Project Homepage</a></strong></small><br/>
-        <small>&copy; 2023/2024 <strong>Mark D Wilkinson</strong></small><br/>
-        <small>Proyecto TED2021-130788B-I00 financiado por MCIN/AEI /10.13039/501100011033 y por la Unión Europea NextGeneration EU/PRTR</small><br/>
-        <img src="/images/ted.png">
-      </footer>
+
+
+
+<footer class="c-footer">
+  <br />
+  <br />
+
+  <h3>Funding</h3>
+
+  <b>TED2021-130788B-I00</b>
+  <br />
+  Proyecto TED2021-130788B-I00 financed by
+  <br />
+  MCIN/AEI /10.13039/501100011033 and by the European Union Next Generation EU/ PRTR.
+  <br />
+  <img width="300" src="/images/ted-logo.png" />
+  <br />
+  <br />
+  <br />
+  The FLAIR-GG computational infrastructure is supported by the
+  <br />"Severo Ochoa Program for Centres of Excellence in R&D 2022-2025" from the
+  Agencia Estatal de Investigación of Spain, awarded to the
+  <br />Center for Plant Biotechnology and Genomics (CBGP UPM-INIA/CSIC).
+  <br />
+  <br />
+  <br />
+  <br />
+  <b>Principal Investigators:</b>
+  <br />
+  <br />
+  Moreno Vazquez, Santiago<br />
+  UPM grupo: Biodiversidad y conservación de recursos fitogenéticos
+  <br /><br />
+  Wilkinson, Mark Denis <br />
+  CBGP UPM-INIA/CSIC. <br />
+  UPM grupo: Abordajes Multidisciplinares en la Interfaz Planta-Microorganismo<br />
+</footer>
+
+</body>
diff --git a/VP/wrapped_services/diadra/app/views/_head.erb b/VP/wrapped_services/diadra/app/views/_head.erb
@@ -1,16 +1,17 @@
-  <head>
-    <meta charset="utf-8" />
-    <meta http-equiv="X-UA-Compatible" content="IE=edge, chrome=1" />
+<HEAD>
+  <title>FLAIR-GG Wrapped Services: Diadra</title>
 
-    <title>FLAIR-GG Virtual Platform</title>
+  <link rel="stylesheet" type="text/css" href="/stylesheets/flexbox.css" />
+  <link href="https://fonts.googleapis.com/css?family=Source+Sans+Pro:300,900" rel="stylesheet">
 
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+</HEAD>
 
-    <link rel="stylesheet" href="/stylesheets/main.css" />
-    <link rel="stylesheet" href="/stylesheets/all.css" />
-    <link rel="stylesheet" href="/stylesheets/alvaro.css" />
-    <link rel="stylesheet" href="/stylesheets/regular.css" />
-    <link rel="stylesheet" href="/stylesheets/solid.css" />
-
-
-  </head>
+<body>
+  <header class="c-header">
+    <br />
+    <img width="500" src="/images/flair-gg-logo.png" />
+    <br />
+    <br />
+    <br />
+    <h1>FLAIR-GG Diadra Service</h1>
+  </header>
diff --git a/VP/wrapped_services/diadra/app/views/_sidebar.erb b/VP/wrapped_services/diadra/app/views/_sidebar.erb
diff --git a/VP/wrapped_services/diadra/app/views/discovered_layout.erb b/VP/wrapped_services/diadra/app/views/discovered_layout.erb
diff --git a/VP/wrapped_services/diadra/app/views/discovered_layout.erb_BAK b/VP/wrapped_services/diadra/app/views/discovered_layout.erb_BAK
diff --git a/VP/wrapped_services/diadra/app/views/execution_results_layout.erb b/VP/wrapped_services/diadra/app/views/execution_results_layout.erb
diff --git a/VP/wrapped_services/diadra/app/views/layout.erb b/VP/wrapped_services/diadra/app/views/layout.erb
diff --git a/VP/wrapped_services/diadra/app/views/lookupform.erb b/VP/wrapped_services/diadra/app/views/lookupform.erb
@@ -0,0 +1,36 @@
+<!DOCTYPE html>
+<!--[if lt IE 7]> <html class="no-js ie6 oldie" lang="en"> <![endif]-->
+<!--[if IE 7]>    <html class="no-js ie7 oldie" lang="en"> <![endif]-->
+<!--[if IE 8]>    <html class="no-js ie8 oldie" lang="en"> <![endif]-->
+<!--[if gt IE 8]><!--> <html class="no-js" lang="en"> <!--<![endif]-->
+
+  <%= erb :_head %>
+
+
+  <section class="c-posts">
+
+    <article class="c-posts__item">
+
+      <h2>Enter Taxon Name </h2>
+      <br/>
+      <form action="/diadra/lookup" method="GET">
+      <input type="text" width="40" name="species"/>
+      <br/>
+      <input type="submit" value="Species Lookup"/>
+      </form>
+
+
+    </article>
+
+  </section>
+
+
+  <%= erb :_footer %>
+
+    <script src="http://ajax.googleapis.com/ajax/libs/jquery/1/jquery.min.js"></script>
+    <!--[if lt IE 7]>
+      <script src="//ajax.googleapis.com/ajax/libs/chrome-frame/1.0.2/CFInstall.min.js"></script>
+      <script>window.attachEvent("onload",function(){CFInstall.check({mode:"overlay"})})</script>
+    <![endif]-->
+  </body>
+</html>