various typos, and silence rubocop

.rubocop.yml

@@ -13,4 +13,13 @@ Layout/LineLength:
   Max: 120
 
 Metrics/MethodLength:
-  Max: 40
+  Max: 100
+
+Metrics/AbcSize:
+  Enabled: false
+
+Style/ClassVars:
+  Enabled: false
+
+Layout/ExtraSpacing:
+  Enabled: false

TransformationPipeline/data/administrative_yarrrml.pre-yaml

@@ -13,7 +13,6 @@ prefixes:
   foaf: http://xmlns.com/foaf/0.1/
   schema: https://schema.org/
 
-
 sources:
   source_location:
     access: /mnt/data/administrative.csv
@@ -70,8 +69,12 @@ mapping:
       predicate: rdfs:label
 
     - objects:
+      - function : idlab-fn:concat
+        parameters: 
+          - [idlab-fn:str, $(org_id)]
+          - [idlab-fn:otherStr, 'Organization']
+          - [idlab-fn:delimiter, '#']
         type: iri
-        value: $(org_id)#OrganizationID
       predicate: sio:SIO_000671
 
 
@@ -81,7 +84,14 @@ mapping:
     graph: this:$(uniqid)_Context
     sources:
     - source_location
-    subjects: $(org_id)#OrganizationID
+    subjects: 
+      - function : idlab-fn:concat
+        parameters: 
+          - [idlab-fn:str, $(org_id)]
+          - [idlab-fn:otherStr, 'Organization']
+          - [idlab-fn:delimiter, '#']
+        type: iri
+
     predicateobject:
     - objects:
         type: iri

VP/vp-interface/Gemfile

@@ -1,3 +1,5 @@
+# frozen_string_literal: false
+
 source "https://rubygems.org"
 
 gemspec

VP/vp-interface/app/controllers/application_controller.rb

@@ -1,4 +1,5 @@
-# require './config/environment'
+# frozen_string_literal: false
+
 require_relative "../../config/environment" # for docker
 require "swagger/blocks"
 require "sinatra"

VP/vp-interface/app/controllers/routes.rb

@@ -1,8 +1,8 @@
+# frozen_string_literal: false
 
 def set_routes(classes: allclasses)
-
-  set :server_settings, :timeout => 180
-  set :public_folder, 'public'
+  set :server_settings, timeout: 180
+  set :public_folder, "public"
 
   get "/flair-gg-vp-server" do
     content_type :json
@@ -29,19 +29,19 @@ def set_routes(classes: allclasses)
 
   get "/flair-gg-vp-server/ontology-search" do
     term = params["uri"]
-    term = term.gsub(/\S+\:/, "") unless term =~ /^http/
-    @discoverables = VP.current_vp.ontology_search_shell(term: term)  # "./lib/vp"
+    term = term.gsub(/\S+:/, "") unless term =~ /^http/
+    @discoverables = VP.current_vp.ontology_search_shell(term: term) # "./lib/vp"
     erb :discovered_layout
   end
 
   get "/flair-gg-vp-server/retrieve-services" do
     term = params["services"]
-    @servicecollection, @commonparams = VP.current_vp.retrieve_sevices(term: term)  # "./lib/vp"
+    @servicecollection, @commonparams = VP.current_vp.retrieve_sevices(term: term) # "./lib/vp"
     erb :services_layout
   end
 
   get "/flair-gg-vp-server/wordcloud" do
-    @freqs = Wordcloud.new.count_words  # "./lib/wordcloud"
+    @freqs = Wordcloud.new.count_words # "./lib/wordcloud"
     erb :wordcloud
   end
 
@@ -65,15 +65,11 @@ def set_routes(classes: allclasses)
   end
 
   post "/flair-gg-vp-server/execute-data-services" do
-
     @results = VP.current_vp.execute_data_services(params: params)
     erb :execution_results_layout
-
   end
 
   before do
     @services = VP.current_vp.collect_data_services
-
   end
-
 end

VP/vp-interface/lib/services.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: false
+
 require "openapi3_parser"
 require "cgi"
 

VP/vp-interface/lib/vp.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: false
+
 require "linkeddata"
 require "digest"
 require "restclient"
@@ -19,8 +21,8 @@ class VP
   @@thisvp = ""
 
   def initialize(config: vpconfig)
-    @vpconfig = vpconfig  # my configuration
-    @networkgraph = RDF::Graph.new  # the full network of FDP triples
+    @vpconfig = config # my configuration
+    @networkgraph = RDF::Graph.new # the full network of FDP triples
     @fdps = []  # the FDPs that I know
     @aboutme = []  # the list of keywords for the word cloud
     load_fdps_from_cache
@@ -52,7 +54,7 @@ def self.restart
 
     fdpsites = VPConfig::FDPSITES   # current sites
     fdpsites.each do |fdp_address|   # one for every active FDP site
-      warn "deleting #{fdp_address}"      
+      warn "deleting #{fdp_address}"
       hexaddress = Digest::SHA256.hexdigest fdp_address
       FileUtils.rm_f("./cache/#{hexaddress}.marsh")  # clear existing cache
     end
@@ -61,7 +63,7 @@ def self.restart
 
     fdpsites = VPConfig::FDPSITES   # new set of sites
     fdpsites.each do |fdp_address|   # one for every active FDP site
-      warn "working with #{fdp_address}"      
+      warn "working with #{fdp_address}"
       fdp = FDP.new(address: fdp_address)
       fdp.freezeme
       vp.add_fdp(fdp: fdp)
@@ -104,13 +106,13 @@ def keyword_search_shell(keyword:)
     discoverables = keyword_search(keyword: keyword)
     discoverables
   end
-  
+
   def ontology_search_shell(term:)
     warn "in ontology search shell"
     discoverables = ontology_search(uri: term)
     discoverables
   end
-  
+
   def keyword_search(keyword: "")
     @graph = self.networkgraph
     vpd = SPARQL.parse("