enhancing documentation

SemanticModel/CSV/README.md

@@ -3,7 +3,7 @@
 ## Location:
 
 - filename:  location.csv
-- yarrrml:  location_yarrrml.yaml
+- yarrrml:  location_yarrrml.pre-yaml
 
 **bgvid**: string
 
@@ -34,7 +34,7 @@
 ## Germplasm:
 
 - filename:  germplasm.csv
-- yarrrml:  germplasm.yaml
+- yarrrml:  germplasm.pre-yaml
 
 **bgvid**: string
 

SemanticModel/index.html

@@ -0,0 +1,45 @@
+<H1>Semantic Model and Template Based Transformation Pipeline</H1>
+
+Jump to:<br/>
+<a href="#model">Model</a><br/>
+<a href="#pipeline">Pipeline</a>
+
+<h2 id="model">Semantic Model</h2>
+
+The FLAIR-GG Semantic Model is broken into 3 parts:<br/>
+<ul>
+
+  <li>Location Information:  The site of collection</li>
+  <li>Germplasm Information: Species, taxon, phenotype, etc.</li>
+  <li>Administrative: Who collected it, where is it stored, are there duplicates, species-at-risk, etc.</li>
+
+</ul>
+
+<h3>Location</h3>
+
+<a href="./YARRRML/location_yarrrml.pre-yaml">[YARRRML Here]</a>
+<br/><br/>
+<img src="./Images/Location%20Data%20Model.png"/>
+
+
+<h3>Germplasm Information</h3>
+
+Coming soon!
+
+<h3>Administrative</h3>
+
+
+<a href="./YARRRML/administrative_yarrrml.pre-yaml">[YARRRML Here]</a>
+<br/><br/>
+<img src="./Images/Administrative%20Data%20Model.png"/>
+
+<br/><br/>
+<hr/>
+<h2 id="model">Transformation Pipeline</h2>
+
+Transformation of "native" data formats into RDF formats is accomplished via a <a href="SemanticModel/CSV/README.md">set of CSV templates</a>.
+
+<br/>
+Each CSV template is paired with an equivalent <a href="https://rml.io/yarrrml/">YARRRML</a> template, and data transformation is accomplished using 
+a customized version of <a href="https://github.com/ejp-rd-vp/yarrrml-rmlmapper-docker-ejp">yarrrml-rmlmapper-docker</a> (originally from the
+team at <a href="https://github.com/RMLio/yarrrml-rmlmapper-docker">RML.io</a>)

index.html

@@ -2,10 +2,23 @@ <h2>Links for the FLAIR-GG Virtual Platform</h2>
 <br/>
 <br/>
 <h3>General Documentation</h3>
-<ul>
-<li><a href="./VP/index.html">VP Documentation</a></li>
-<li><a href="https://wilkinsonlab.github.io/multi-crop-passport-descriptor-ontology/multi-passport-descriptor.owl">FAO Multi Passport Descriptor Ontology</a></li>
-</ul>
+
+<p>The FLAIR-GG Project aims to <a href="https://www.go-fair.org/fair-principles/">FAIRify</a> the <a href="http://www.bancodegermoplasma.upm.es/">
+  Banco de Germoplasma Vegetal de la Universidad Politécnica de Madrid (BGV)</a> and to interlink it with other Germplasm resources throughout Spain and the world.</p>
+
+  <p>This will be accomplished using a variety of technologies for modelling and transforming relational data from the BGV into FAIR formats such as ontologically grounded RDF
+  </p>
+
+  <p>All germplasm resources will be connected via a shared portal called the "Virtual Platform" (VP), where it will be possible to execute federated queries over 
+    all participants in the FLAIR-GG network  </p>
+
+  <h3>Component Documentation</h3>
+  <ul>
+    <li><a href="./SemanticModel/index.html">Termplate-based transformation pipeline</a></li>
+
+    <li><a href="./VP/index.html">VP Documentation</a></li>
+    <li><a href="https://wilkinsonlab.github.io/multi-crop-passport-descriptor-ontology/multi-passport-descriptor.owl">FAO Multi Passport Descriptor Ontology</a></li>
+  </ul>
 <br/>
 <br/>
 <h3>OpenAPI YAML Interfaces for BGV services</h3>
@@ -19,3 +32,19 @@ <h3>Swagger tester for interfaces</h3>
 <ul>
 <li><a href="https://bgv.cbgp.upm.es/swagger">Swagger-UI</a></li>
 </ul>
+
+
+<h3>Funding</h3>
+
+<b>TED2021-130788B-I00</b>
+<br/>
+<img width="300" src="./VP/images/ted-logo.png" />
+<br/>
+
+Moreno Vazquez, Santiago<br/>
+UPM. Biodiversidad y conservación de recursos fitogenéticos (Grupo de investigacion)
+<br/><br/>
+Wilkinson, Mark Denis <br/>
+Abordajes Multidisciplinares en la Interfaz Planta-Microorganismo (Grupo de investigacion)<br/>
+
+