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Optimise some implementations in TransPhylo R package using Rcpp

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TransPhyloC

Optimise some implementations in TransPhylo R package using Rcpp The TransPhylo package was created by Xavier Didelot for Bayesian Inference of Transmission Tree under a Within-Host Evolution Model. It is available on https://github.com/xavierdidelot/TransPhylo

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Optimise some implementations in TransPhylo R package using Rcpp

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