Merge pull request #33 from bedroge/bioconductor

Make Bioconductor demo compatible with all the current EESSI repos and versions
EESSI · Apr 29, 2024 · 389b56a · 389b56a
2 parents 30b79d7 + 275853a
commit 389b56a
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/Bioconductor/run.sh b/Bioconductor/run.sh
@@ -1,5 +1,9 @@
 #!/bin/bash
+set -e
 
-module load R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
+if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION == "2023.06" ]]; then module load R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2
+elif [[ $EESSI_CVMFS_REPO == "/cvmfs/pilot.eessi-hpc.org" ]] && [[ $EESSI_PILOT_VERSION == "2021.12" ]]; then module load R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
+else echo "Don't know which Bioconductor module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
+fi
 
 time Rscript dna.R