Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove all references to the pilot repository #37

Merged
merged 4 commits into from
May 8, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
name: Tests for EESSI pilot repo (native access)
name: Tests for EESSI software repo (native access)
on: [push, pull_request, workflow_dispatch]
# Declare default permissions as read only.
permissions: read-all
jobs:
pilot_repo_native:
software_repo_native:
runs-on: ubuntu-20.04
strategy:
fail-fast: false
Expand All @@ -14,25 +14,25 @@ jobs:
- GROMACS
- OpenFOAM
- TensorFlow
- ESPResSo
EESSI_VERSION:
- "2021.06"
- "2021.12"
- "2023.06"
steps:
- name: Check out software-layer repository
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
with:
persist-credentials: false

- name: Mount EESSI CernVM-FS pilot repository
- name: Mount EESSI CernVM-FS software repository
uses: cvmfs-contrib/github-action-cvmfs@55899ca74cf78ab874bdf47f5a804e47c198743c # v4.0
with:
cvmfs_config_package: https://github.com/EESSI/filesystem-layer/releases/download/latest/cvmfs-config-eessi_latest_all.deb
cvmfs_http_proxy: DIRECT
cvmfs_repositories: pilot.eessi-hpc.org
cvmfs_repositories: software.eessi.io

- name: Run demo
run: |
source /cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}/init/bash
source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash
cd ${{matrix.EESSI_DEMO}}
pwd
./run.sh
3 changes: 1 addition & 2 deletions Bioconductor/run.sh
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,7 @@
set -e

if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION == "2023.06" ]]; then module load R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2
elif [[ $EESSI_CVMFS_REPO == "/cvmfs/pilot.eessi-hpc.org" ]] && [[ $EESSI_PILOT_VERSION == "2021.12" ]]; then module load R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
else echo "Don't know which Bioconductor module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
else echo "Don't know which Bioconductor module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}" >&2; exit 1
fi

time Rscript dna.R
223 changes: 0 additions & 223 deletions CitC/README.md

This file was deleted.

2 changes: 1 addition & 1 deletion ESPResSo/run.sh
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION ==
module load ESPResSo/4.2.1-foss-2023a
module load matplotlib/3.7.2-gfbf-2023a
module load PyQt5/5.15.10-GCCcore-12.3.0
else echo "Don't know which ESPResSo module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
else echo "Don't know which ESPResSo module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}" >&2; exit 1
fi

echo generating plate_capacitor_before.png and plate_capacitor_after.png ...
Expand Down
3 changes: 1 addition & 2 deletions GROMACS/run.sh
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,7 @@
set -e

if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION == "2023.06" ]]; then module load GROMACS/2024.1-foss-2023b
elif [[ $EESSI_CVMFS_REPO == "/cvmfs/pilot.eessi-hpc.org" ]] && [[ $EESSI_PILOT_VERSION == "2021.12" ]]; then module load GROMACS/2020.1-foss-2020a-Python-3.8.2
else echo "Don't know which GROMACS module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
else echo "Don't know which GROMACS module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}" >&2; exit 1
fi

if [ ! -f GROMACS_TestCaseA.tar.gz ]; then
Expand Down
40 changes: 0 additions & 40 deletions Magic_Castle/README.md

This file was deleted.

Loading