add cmd to python install #74
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| name: Release | |
| on: | |
| push: | |
| jobs: | |
| build-macos-dist: | |
| runs-on: macos-12 | |
| outputs: | |
| tag_message: ${{env.TAG_MESSAGE}} | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Set version number | |
| run: echo VERSION_NUMBER=${GITHUB_REF_NAME:1} >> $GITHUB_ENV | |
| - name: Set tag messsage | |
| run: | | |
| git fetch --tags --force | |
| echo "TAG_MESSAGE=$(git tag -l --sort=-taggerdate --format='%(contents)' $(git describe --tags $(git branch --show-current) ))" >> $GITHUB_ENV | |
| - name: Build GenomicsDB python distribution | |
| shell: bash | |
| working-directory: ${{github.workspace}}/package | |
| run: ./publish_package_local.sh | |
| - name: Archive macos python distribution as Artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: macos-dist-$VERSION_NUMBER | |
| path: dist | |
| build-linux-dist: | |
| runs-on: ubuntu-22.04 | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Set version number | |
| run: | | |
| echo VERSION_NUMBER=${GITHUB_REF_NAME:1} >> $GITHUB_ENV | |
| echo USER_ID=$(id -u) >> $GITHUB_ENV | |
| echo GROUP_ID=$(id -g) >> $GITHUB_ENV | |
| chmod -R a+w . | |
| sudo apt-get update -q && sudo apt install -y libcurl4-openssl-dev curl libssl-dev | |
| - name: Build docker image with GenomicsDB and Python | |
| uses: docker/build-push-action@v5 | |
| with: | |
| file: package/Dockerfile | |
| tags: genomicsdb:python | |
| context: package | |
| build-args: genomicsdb_branch=develop | |
| - name: Build GenomicsDB linux distribution | |
| shell: bash | |
| working-directory: ${{github.workspace}}/package | |
| run: ./publish_package.sh test-release linux | |
| - name: Archive linux python distribution as Artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ubuntu-dist-$VERSION_NUMBER | |
| path: dist | |
| #publish: | |
| #runs-on: ubuntu-22.04 | |
| #needs: [build-macos-dist, build-linux-dist] | |
| #steps: | |
| #- name: Download macos distribution archive | |
| #uses: actions/download-artifact@v3 | |
| #with: | |
| #name: macos-dist-$VERSION_NUMBER | |
| #- name: Download ubuntu distribution archive | |
| #uses: actions/download-artifact@v3 | |
| #with: | |
| #name: ubuntu-dist-$VERSION_NUMBER | |
| #- name: Release | |
| #run: twine upload -r testpypi -u "__TOKEN__" -p {{secrets.TESTPYPI}} | |
| test: | |
| #needs: [publish] | |
| needs: [build-linux-dist] | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.11"] | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Download ubuntu distribution archive | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: ubuntu-dist-$VERSION_NUMBER | |
| - name: Install package | |
| run: | | |
| pip install $(find genomicsdb-*-cp311*.whl) || python -m pip install $(find genomicsdb-*-cp311*.whl) | |
| pip show genomicsdb || python -m pip show genomicsdb | |
| - name: Run test | |
| run: | | |
| echo test will run here after making sure | |