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@SMD-Bioinformatics-Lund

SMD Bioinformatics Lund

Bioinformatic team at Section for Molecular Diagnostics, Laboratory Services, Region Skåne, Lund

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  1. gens gens Public

    JavaScript 13 5

  2. nextflow_wgs nextflow_wgs Public

    Perl 6 5

  3. nextflow_microwgs nextflow_microwgs Public

    Perl 2 1

  4. nextflow_tumwgs nextflow_tumwgs Public

    Perl 2 2

  5. SomaticPanelPipeline SomaticPanelPipeline Public

    Nextflow 2

Repositories

Showing 10 of 57 repositories
  • bonsai-prp Public

    Pipeline output Processing Program for Bonsai

    SMD-Bioinformatics-Lund/bonsai-prp’s past year of commit activity
    Python 0 GPL-3.0 0 5 0 Updated Jan 10, 2025
  • bonsai Public

    Visualize and analyze resistance and outbreak of bacterial pathogen

    SMD-Bioinformatics-Lund/bonsai’s past year of commit activity
    Standard ML 4 GPL-3.0 1 19 1 Updated Jan 10, 2025
  • nextflow_wgs Public
    SMD-Bioinformatics-Lund/nextflow_wgs’s past year of commit activity
    Perl 6 5 89 (3 issues need help) 4 Updated Jan 10, 2025
  • coyote_blueprinted Public
    SMD-Bioinformatics-Lund/coyote_blueprinted’s past year of commit activity
    Python 0 0 1 1 Updated Jan 8, 2025
  • gms_16S Public Forked from genomic-medicine-sweden/gms_16S

    A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.

    SMD-Bioinformatics-Lund/gms_16S’s past year of commit activity
    Groovy 0 GPL-3.0 2 0 1 Updated Jan 2, 2025
  • SomaticPanelPipeline Public
    SMD-Bioinformatics-Lund/SomaticPanelPipeline’s past year of commit activity
    Nextflow 0 2 17 (1 issue needs help) 1 Updated Dec 28, 2024
  • cll_genie Public
    SMD-Bioinformatics-Lund/cll_genie’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated Dec 25, 2024
  • Panel-coverage-tools Public

    Tools to calculate panel coverage based on d4 data

    SMD-Bioinformatics-Lund/Panel-coverage-tools’s past year of commit activity
    Python 0 0 0 0 Updated Dec 18, 2024
  • coyote_cli Public

    command line interface for coyote

    SMD-Bioinformatics-Lund/coyote_cli’s past year of commit activity
    Python 0 1 2 0 Updated Dec 17, 2024
  • Nisse Public

    Post-processing pipeline for Tomte

    SMD-Bioinformatics-Lund/Nisse’s past year of commit activity
    Nextflow 0 0 7 0 Updated Dec 13, 2024
View all repositories

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