Lk pd 2654 tso metrics #1336

ekiernan · 2024-07-17T15:17:55Z

testing

github-actions · 2024-07-17T15:23:28Z

Remember to squash merge!

github-actions · 2024-07-17T15:23:38Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-07-17T15:23:42Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-17T15:34:11Z

Remember to squash merge!

github-actions · 2024-07-17T15:34:17Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-07-17T15:34:22Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-24T13:15:07Z

Remember to squash merge!

github-actions · 2024-07-24T13:15:17Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not had its version updated
SlideSeq.wdl has not been changed and needs updating
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-24T13:15:18Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-24T13:29:45Z

Remember to squash merge!

github-actions · 2024-07-24T13:29:56Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-24T13:30:00Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not had its version updated
SlideSeq.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-24T13:43:07Z

Remember to squash merge!

github-actions · 2024-07-24T13:43:19Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not had its version updated
SlideSeq.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-24T13:43:19Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

khajoue2

Changelogs needs to be updated

github-actions · 2024-07-25T14:56:03Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-25T16:48:44Z

Remember to squash merge!

github-actions · 2024-07-25T16:48:57Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-25T16:48:57Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Multiome.wdl has not been changed and needs updating
PairedTag.wdl has not been changed and needs updating
Optimus.wdl has not had its version updated
SlideSeq.wdl has not had its version updated
atac.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed

…itute/warp into lk-PD-2654-tso-metrics

github-actions · 2024-07-25T17:01:19Z

Remember to squash merge!

github-actions · 2024-07-25T17:01:29Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Multiome.wdl has not been changed and needs updating
PairedTag.wdl has not been changed and needs updating
Optimus.wdl has not had its version updated
SlideSeq.wdl has not had its version updated
atac.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-25T17:01:31Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-07-25T17:42:42Z

Remember to squash merge!

github-actions · 2024-07-25T17:42:53Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

github-actions · 2024-07-25T17:42:53Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

kevinpalis

LGTM

ekiernan · 2024-07-26T18:26:27Z

Verified h5ad outputs for all tests; h5ads are identical except for NHashID and tso_reads. Will update truth.

github-actions · 2024-07-26T18:26:44Z

Remember to squash merge!

github-actions · 2024-07-26T18:26:55Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

github-actions · 2024-07-26T18:26:56Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

ekiernan · 2024-07-29T13:05:10Z

retest this please

ekiernan · 2024-07-29T14:44:54Z

retest this please

github-actions · 2024-07-29T17:21:55Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

github-actions · 2024-07-29T17:31:20Z

Remember to squash merge!

github-actions · 2024-07-29T17:31:29Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

github-actions · 2024-07-29T17:31:32Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

ekiernan and others added 8 commits July 9, 2024 15:09

adding cN tag to STAR bams for TSO metrics

599c848

changed docker for cell and gene metrics

f95fd71

Merge branch 'develop' into lk-PD-2654-tso-metrics

fb7e40e

adding new warp-tools docker for tso tag to h5ad utils

ffa5a46

updated nhash_id generation in library metrics and added tso metrics

e81166f

adding print statements

3e915d8

fixing anndata object calculation for tso

8c8028d

Merge branch 'develop' into lk-PD-2654-tso-metrics

8c57662

update optimus warp-tools docker for testing

945b14a

Merge branch 'develop' into lk-PD-2654-tso-metrics

82d0925

updated warp-tools docker to v2_1_0

a58c85f

updated warp_tools docker 2_0_1 to 2_1_0

5d0e266

khajoue2 approved these changes Jul 24, 2024

View reviewed changes

ekiernan closed this Jul 24, 2024

testing gene metrics

a9740c8

Merge branch 'develop' into lk-PD-2654-tso-metrics

48836ab

ekiernan added 2 commits July 25, 2024 12:59

updated with warp_tools 2_1_1

27a59cc

Merge branch 'lk-PD-2654-tso-metrics' of https://github.com/broadinst…

d5be491

…itute/warp into lk-PD-2654-tso-metrics

updated changelogs and versions

94c4ad8

kevinpalis approved these changes Jul 25, 2024

View reviewed changes

Merge branch 'develop' into lk-PD-2654-tso-metrics

560a2ad

Updated pipeline_versions.txt with all pipeline version information

950ebfe

add space to reactivate tests

9c7fbf0

ekiernan merged commit 7245d14 into develop Jul 29, 2024
12 checks passed

ekiernan deleted the lk-PD-2654-tso-metrics branch July 29, 2024 18:01

Lk pd 2654 tso metrics #1336

Lk pd 2654 tso metrics #1336

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ekiernan commented Jul 17, 2024

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🔍Version Validation Results:

github-actions bot commented Jul 17, 2024

🔍Changelog Validation Results:

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🔍Version Validation Results:

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🔍Changelog Validation Results:

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🔍Changelog Validation Results:

github-actions bot commented Jul 24, 2024

github-actions bot commented Jul 24, 2024

🔍Changelog Validation Results:

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🔍Version Validation Results:

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🔍Version Validation Results:

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github-actions bot commented Jul 25, 2024

🔍Changelog Validation Results:

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github-actions bot commented Jul 25, 2024

🔍Changelog Validation Results:

github-actions bot commented Jul 25, 2024

🔍Version Validation Results:

github-actions bot commented Jul 25, 2024

github-actions bot commented Jul 25, 2024

🔍Version Validation Results:

github-actions bot commented Jul 25, 2024

🔍Changelog Validation Results:

github-actions bot commented Jul 25, 2024

github-actions bot commented Jul 25, 2024

🔍Changelog Validation Results:

github-actions bot commented Jul 25, 2024

🔍Version Validation Results:

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ekiernan commented Jul 26, 2024 • edited Loading

github-actions bot commented Jul 26, 2024

github-actions bot commented Jul 26, 2024

🔍Changelog Validation Results:

github-actions bot commented Jul 26, 2024

🔍Version Validation Results:

ekiernan commented Jul 29, 2024

ekiernan commented Jul 29, 2024

github-actions bot commented Jul 29, 2024

🔍Changelog Validation Results:

github-actions bot commented Jul 29, 2024

github-actions bot commented Jul 29, 2024

🔍Changelog Validation Results:

github-actions bot commented Jul 29, 2024

🔍Version Validation Results:

ekiernan commented Jul 26, 2024 •

edited

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