Code

Lk pd 2654 tso metrics#1336

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ekiernan merged 22 commits intodevelopbroadinstitute/warp:developfrom lk-PD-2654-tso-metricsbroadinstitute/warp:lk-PD-2654-tso-metricsCopy head branch name to clipboardJul 29, 2024

+296-43

Commits

Commits on Jul 9, 2024

• adding cN tag to STAR bams for TSO metrics

  ekiernan

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Commits on Jul 15, 2024

• changed docker for cell and gene metrics

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• Merge branch 'develop' into lk-PD-2654-tso-metrics

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Commits on Jul 16, 2024

• adding new warp-tools docker for tso tag to h5ad utils

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Commits on Jul 17, 2024

• updated nhash_id generation in library metrics and added tso metrics

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• adding print statements

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• fixing anndata object calculation for tso

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• Merge branch 'develop' into lk-PD-2654-tso-metrics

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• update optimus warp-tools docker for testing

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Commits on Jul 24, 2024

• Merge branch 'develop' into lk-PD-2654-tso-metrics

  ekiernan

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• updated warp-tools docker to v2_1_0

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• updated warp_tools docker 2_0_1 to 2_1_0

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• testing gene metrics

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Commits on Jul 25, 2024

• pushing updates for slideseq

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• testing new warp-tools docker in slideseq

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• Merge branch 'develop' into lk-PD-2654-tso-metrics

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• updated with warp_tools 2_1_1

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• Merge branch 'lk-PD-2654-tso-metrics' of https://github.com/broadinstitute/warp into lk-PD-2654-tso-metrics

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• updated changelogs and versions

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Commits on Jul 26, 2024

• Merge branch 'develop' into lk-PD-2654-tso-metrics

  ekiernan

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• Updated pipeline_versions.txt with all pipeline version information

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Commits on Jul 29, 2024

• add space to reactivate tests

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