Update binac.config #732
Update binac.config #732
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One cacheDir per User Add libraryDir to config.
| @@ -8,7 +8,8 @@ params { | |||
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| singularity { | |||
| enabled = true | |||
| cacheDir = '/beegfs/work/container/apptainer_cache' | |||
| libraryDir = '/beegfs/work/container/apptainer_library' | |||
| cacheDir = '/beegfs/work/container/apptainer_cache/$USER' | |||
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Just to check, have you tested this? My recollection is that nextflow isn't happy if you point it at an non-existing cache directory (and while it shouldn't be super hard, if it gets into setting up a system to create these, maybe it's not worth caring about if you knew what pipelines people would run and could pull those images into the library directory anyway).
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Nextflow creates a non-existing cache directory. /beegfs/work/container/apptainer_cache/ still exists and Nextflow creates the $USERpart. I tested it by deleting my directory in the cache and running a pipeline from scratch. The pipeline recreates the directory.
But I made a big mistake by using single quotes, $USER doesn't get resolved and it creates a directory called $USER. A very embarrassing mistake.
name: binac config
about: update binac config
Please follow these steps before submitting your PR:
masterbranchSorry for the second pull request within a week. As @pontus pointed out in the last (already merged) /pull/728 request, setting a single global
cacheDiris not ideal for security. I also added alibraryDir.