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Update binac.config #732

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Aug 14, 2024
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Update binac.config #732

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3 changes: 2 additions & 1 deletion conf/binac.config
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,8 @@ params {

singularity {
enabled = true
cacheDir = '/beegfs/work/container/apptainer_cache'
libraryDir = '/beegfs/work/container/apptainer_library'
cacheDir = '/beegfs/work/container/apptainer_cache/$USER'
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Just to check, have you tested this? My recollection is that nextflow isn't happy if you point it at an non-existing cache directory (and while it shouldn't be super hard, if it gets into setting up a system to create these, maybe it's not worth caring about if you knew what pipelines people would run and could pull those images into the library directory anyway).

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Nextflow creates a non-existing cache directory. /beegfs/work/container/apptainer_cache/ still exists and Nextflow creates the $USERpart. I tested it by deleting my directory in the cache and running a pipeline from scratch. The pipeline recreates the directory.
But I made a big mistake by using single quotes, $USER doesn't get resolved and it creates a directory called $USER. A very embarrassing mistake.

}

process {
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