fix

ratschlab · Mar 21, 2024 · 4a93cac · 4a93cac
1 parent 258bca3
commit 4a93cac
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Showing 3 changed files with 5 additions and 2 deletions.
diff --git a/metagraph/CMakeLists.txt b/metagraph/CMakeLists.txt
@@ -270,7 +270,9 @@ include_directories(
   external-libraries/zlib
   external-libraries/sdust
   external-libraries/simde-no-tests
+  external-libraries/sshash
   external-libraries/sshash/include
+  external-libraries/sshash/external/pthash
   external-libraries/sshash/external/pthash/external/essentials/include
   ${PROJECT_SOURCE_DIR}/src
 )

diff --git a/metagraph/src/graph/representation/hash/dbg_sshash.cpp b/metagraph/src/graph/representation/hash/dbg_sshash.cpp
@@ -1,6 +1,8 @@
 #include "dbg_sshash.hpp"
 #include <dictionary.hpp>
 
+#include <query/streaming_query_regular_parsing.hpp>
+
 
 namespace mtg {
 namespace graph {
@@ -15,7 +17,6 @@ DBGSSHash::DBGSSHash(std::string const& input_filename, size_t k, Mode mode):k_(
     build_config.k = k;//
     // quick fix for value of m... k/2 but odd
     build_config.m = (k_+1)/2;
-    build_config.num_threads = get_num_threads();
     if(build_config.m % 2 == 0) build_config.m++;
     dict_ = std::make_unique<sshash::dictionary>();
     dict_->build(input_filename, build_config);

diff --git a/metagraph/src/graph/representation/hash/dbg_sshash.hpp b/metagraph/src/graph/representation/hash/dbg_sshash.hpp
@@ -4,8 +4,8 @@
 #include <iostream>
 #include <tsl/ordered_set.h>
 #include "common/utils/string_utils.hpp"
+#include "common/logger.hpp"
 #include "graph/representation/base/sequence_graph.hpp"
-#include "../external-libraries/sshash/external/pthash/external/essentials/include/essentials.hpp"
 
 namespace sshash{
 class dictionary;