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Remove all references to the pilot repository #37

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merged 4 commits into from
May 8, 2024
Merged

Remove all references to the pilot repository #37

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79697b6
Remove all references to the pilot repository
ocaisa May 8, 2024
f988208
Also update CI workflows
ocaisa May 8, 2024
f1e54a6
Remove final references to pilot
ocaisa May 8, 2024
d19211f
Use client container image
ocaisa May 8, 2024
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12 changes: 6 additions & 6 deletions .github/workflows/pilot_repo_native.yml → .github/workflows/software_repo_native.yml
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Wonder if we want to keep running tests for the pilot repo? Maybe only once per day or week. Thus we would notice if the repository doesn't work anymore.

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It's a bit of work as you have to update the tests anyway since the init script now redirects you to software.eessi.io

Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
name: Tests for EESSI pilot repo (native access)
name: Tests for EESSI software repo (native access)
on: [push, pull_request, workflow_dispatch]
# Declare default permissions as read only.
permissions: read-all
Expand All @@ -14,25 +14,25 @@ jobs:
- GROMACS
- OpenFOAM
- TensorFlow
- ESPResSo
EESSI_VERSION:
- "2021.06"
- "2021.12"
- "2023.06"
steps:
- name: Check out software-layer repository
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
with:
persist-credentials: false

- name: Mount EESSI CernVM-FS pilot repository
- name: Mount EESSI CernVM-FS software repository
uses: cvmfs-contrib/github-action-cvmfs@55899ca74cf78ab874bdf47f5a804e47c198743c # v4.0
with:
cvmfs_config_package: https://github.com/EESSI/filesystem-layer/releases/download/latest/cvmfs-config-eessi_latest_all.deb
cvmfs_http_proxy: DIRECT
cvmfs_repositories: pilot.eessi-hpc.org
cvmfs_repositories: software.eessi.io

- name: Run demo
run: |
source /cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}/init/bash
source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash
cd ${{matrix.EESSI_DEMO}}
pwd
./run.sh
1 change: 0 additions & 1 deletion Bioconductor/run.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,6 @@
set -e

if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION == "2023.06" ]]; then module load R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2
elif [[ $EESSI_CVMFS_REPO == "/cvmfs/pilot.eessi-hpc.org" ]] && [[ $EESSI_PILOT_VERSION == "2021.12" ]]; then module load R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
else echo "Don't know which Bioconductor module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
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fi

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223 changes: 0 additions & 223 deletions CitC/README.md
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1 change: 0 additions & 1 deletion GROMACS/run.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,6 @@
set -e

if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION == "2023.06" ]]; then module load GROMACS/2024.1-foss-2023b
elif [[ $EESSI_CVMFS_REPO == "/cvmfs/pilot.eessi-hpc.org" ]] && [[ $EESSI_PILOT_VERSION == "2021.12" ]]; then module load GROMACS/2020.1-foss-2020a-Python-3.8.2
else echo "Don't know which GROMACS module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
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fi

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40 changes: 0 additions & 40 deletions Magic_Castle/README.md
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