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79 Open 99 Closed
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Issues list

PreprocessSAMs.pl error
#187 opened Dec 7, 2024 by tky199996
threads and time
#186 opened Oct 15, 2024 by Rhia15
1
How to set group counts in human male?
#185 opened Aug 13, 2024 by DayTimeMouse
Draft genome file
#184 opened Jul 26, 2024 by ifoo1213
After ALLHiC mounted HiC, no HIC interaction signal was seen in the results.
#183 opened Jun 18, 2024 by xujialupaoli
Long runtime for one optimization job
#182 opened May 22, 2024 by hans-vg
杂合二倍体挂载
#181 opened May 5, 2024 by Hanjiangna
Partition stage not producing two .tour files
#180 opened May 1, 2024 by Rhia15
Allele table
#179 opened Apr 29, 2024 by Rhia15
Could not retrieve index file for '/gpfs/home/sample.clean.bam'
#178 opened Feb 15, 2024 by sanjin725
Incomplete prunning
#175 opened Jan 4, 2024 by Alteroldis
1
how to generate allele.gene.table based on gmap method
#174 opened Nov 25, 2023 by ghost
A question for Allele.ctg.table
#173 opened Nov 16, 2023 by mikeqiu00
1
Write 0 partitions to input.clusters.txt
#172 opened Oct 19, 2023 by zilaijuand
4
ALLHiC_build error
#171 opened Sep 11, 2023 by lsbaoouc
ALLHiC_plot : AttributeError
#170 opened Sep 3, 2023 by Willtao2023
1
Scaffolding the autotetraploid genome
#169 opened Aug 22, 2023 by YvonneennovY
error in classify.pl (no data in allele contig table)
#168 opened Aug 10, 2023 by karthickbrlab
2
提问
#166 opened Aug 1, 2023 by twdawd
1
partition.pl vs partition_gmap.pl vs partition_gmap.py
#165 opened Jul 15, 2023 by diriano
1
allHIC_partition crashes
#164 opened Jun 6, 2023 by Karina-atriztan
Why there is only one group?
#163 opened May 13, 2023 by Johnsonzcode
4
After checking the file according to #150, the generated plot is still empty
#161 opened Apr 13, 2023 by Huangxc01
gmap2AlleleTable.pl error: Use of uninitialized value $gene in substitution (s///) at gmap2AlleleTable.pl line 20
#159 opened Apr 3, 2023 by Huangxc01
2
allhic_partition
#158 opened Mar 23, 2023 by wyl1219
1
ProTip! Adding no:label will show everything without a label.